Plant GARDEN
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TOP > About the Species(Nicotiana tabacum var. TN90) > genome data >Gene sequences

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SNP Detection
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Data List

All Markers Trait-Related Loci
Nicotiana tabacum

CDS Sequence

CDS ID

lcl|NW_015919125.1_cds_XP_016468393.1_61033
CDS Infomation

[gene=LOC107790933] [db_xref=GeneID:107790933] [protein=squalene synthase] [protein_id=XP_016468393.1] [location=join(8917..9111,9415..9457,9949..10038,11778..11853,12231..12300,12881..13024,13122..13226,13399..13545,14200..14275,14884..14972,15572..15663,15737..15782,15871..15933)] [gbkey=CDS]
Sequence

ATGGGGAGTTTGAGGGCGATTTTGAAGAATCCAGAGGATTTGTATCCATTGGTGAAGTTG
AAGCTAGCGGCTCGACACGCGGAGAAACAGATCCCGCCGTCTCCACATTGGGGCTTCTGT
TACTCAATGCTTCATAAGGTTTCTCGTAGCTTTGCTCTCGTCATTCAACAACTTCCCGTC
GAGCTTCGTGACGCCGTGTGCATTTTCTATTTGGTTCTTCGAGCACTTGACACTGTTGAG
GATGATACCAGCATTCCCACCGATGTTAAAGTACCTATTCTGATCTCTTTTCATCAGCAT
GTTTATGATCGTGAATGGCATTTTTCATGTGGTACAAAAGAGTACAAGGTTCTCATGGAC
CAGTTCCATCATGTTTCAACTGCTTTTCTGGAGCTTAGGAAACATTATCAGCAGGCAATT
GAGGATATTACCATGAGGATGGGTGCAGGAATGGCAAAATTCATATGCAAGGAGGTGGAA
ACAACTGATGATTATGACGAATATTGTCACTATGTAGCTGGGCTTGTTGGGCTAGGATTG
TCAAAACTGTTCCATGCCTCTGGGAAAGAAGATCTGGCTTCAGATTCTCTCTCCAACTCC
ATGGGTTTATTTCTTCAGAAAACAAACATCATTAGAGATTATTTGGAAGACATAAATGAA
GTACCCAAGTGCCGTATGTTCTGGCCCCGTGAAATATGGAGTAAATATGTTAACAAGCTT
GAGGAATTAAAGTACGAGGATAACTCGGCCAAAGCAGTGCAATGTCTCAATGACATGGTC
ACTAATGCTTTATCACATGTAGAAGATTGTTTGACTTACATGTCTGCTTTGCGTGATCCT
TCCATCTTTCGATTCTGTGCTATTCCACAGGTCATGGCAATTGGGACATTAGCTATGTGC
TACGACAACATTGAAGTCTTCAGAGGAGTGGTAAAAATGAGACGTGGTCTGACTGCTAAG
GTCATTGACCAGACCAGGACTATTGCAGATGTATATGGTGCTTTTTTTGACTTTTCTTGT
ATGCTGAAATCCAAGGTTAATAATAATGATCCAAATGCAACAAAAACTCTGAAGAGGCTC
GAAGCTATCCTGAAAACTTGCAGAGATTCGGGAACCTTGAACAAAAGGAAATCCTACATA
ATCAGGAGCGAGCCTAATTACAGTCCAGTTCTGATTGTTGTCATTTTCATCATACTGGCT
ATTATTCTTGCACAGCTATCTGGAAACCGATCTTAG

Peptide Sequence

PEP ID

XP_016468393.1
PEP Infomation

PREDICTED: squalene synthase [Nicotiana tabacum]
Sequence

MGSLRAILKNPEDLYPLVKLKLAARHAEKQIPPSPHWGFCYSMLHKVSRSFALVIQQLPV
ELRDAVCIFYLVLRALDTVEDDTSIPTDVKVPILISFHQHVYDREWHFSCGTKEYKVLMD
QFHHVSTAFLELRKHYQQAIEDITMRMGAGMAKFICKEVETTDDYDEYCHYVAGLVGLGL
SKLFHASGKEDLASDSLSNSMGLFLQKTNIIRDYLEDINEVPKCRMFWPREIWSKYVNKL
EELKYEDNSAKAVQCLNDMVTNALSHVEDCLTYMSALRDPSIFRFCAIPQVMAIGTLAMC
YDNIEVFRGVVKMRRGLTAKVIDQTRTIADVYGAFFDFSCMLKSKVNNNDPNATKTLKRL
EAILKTCRDSGTLNKRKSYIIRSEPNYSPVLIVVIFIILAIILAQLSGNRS

Transcript Sequence

Gene sequence data has not been registered.